As I reached for the last pumpkin in my pantry, a delightful thought came to mind—what if I combined its earthy sweetness with rich, melted chocolate? That’s how I stumbled upon these delicious Pumpkin Protein Muffins, an easy way to indulge in my pumpkin cravings while keeping my nutrition goals on track. Packed with high protein, they’re perfect for busy mornings or as a guilt-free snack. Not only do they satisfy your sweet tooth with melty chocolate chips, but they also stay low in calories—just 122 per muffin! Plus, with simple substitutions available, anyone can whip these up gluten-free or vegan. Are you ready to dive into this cozy fall treat?

Why Are These Muffins a Must-Make?
Simplicity at its best: These muffins are incredibly easy to whip up, making them an ideal choice for novice bakers and seasoned chefs alike.
Guilt-free indulgence: With only 122 calories and 7 grams of protein per muffin, you can enjoy these tasty treats without feeling guilty.
Versatility shines: Whether you’re gluten-free or vegan, simply substitute a few ingredients to make them fit your dietary preferences, just like the options in our Keto Cobb Egg recipe.
Crowd-pleaser: The combination of pumpkin and chocolate is sure to impress friends and family, whether at a brunch or an autumn gathering.
Meal prep friendly: Bake a batch on the weekend, and you’ll have a healthy breakfast ready to go all week long. Pair them with a dollop of Greek yogurt or yogurt found in our Chocolate Protein Pudding for an extra protein boost!
Pumpkin Protein Muffin Ingredients
• For the Muffin Base
- Old Fashioned Rolled Oats – Provides structure and dietary fiber; substitute with certified gluten-free oats for a gluten-free option.
- Pumpkin Puree – Adds moisture and a rich pumpkin flavor; both fresh or canned pumpkin work well.
- Greek Yogurt – Contributes to the protein content and moisture; swap with non-dairy yogurt for a vegan alternative.
- Eggs – Binds ingredients and adds protein; use flax eggs for a vegan substitute.
- Vanilla Flavored Protein Powder – Boosts protein content and adds flavor; any preferred protein powder works, adjust sweetness as necessary.
- Pumpkin Pie Spice – Infuses warm spice flavor; substitute with a mix of ground cinnamon, nutmeg, and ginger if desired.
- Cinnamon – Enhances flavor; no substitution is needed here.
- Baking Powder and Baking Soda – Essential for rising; always ensure they are fresh for the best results.
- Sea Salt – Balances the sweetness; regular salt can be used if that’s what you have on hand.
• For the Finishing Touch
- Dark Chocolate Chips – Adds sweetness and richness; swap with nuts or dried fruit for a delightful twist in your pumpkin protein muffins!
Step‑by‑Step Instructions for Pumpkin Protein Muffins
Step 1: Preheat Your Oven
Start by preheating your oven to 350°F (175°C). This step is crucial for ensuring that your Pumpkin Protein Muffins rise beautifully and bake evenly. While the oven warms up, you can gather all your ingredients and prepare your muffin pan by either greasing it lightly or placing silicone liners in each cup for easy removal.
Step 2: Blend the Oats
Next, place the old-fashioned rolled oats into a Vitamix or any high-speed blender. Blend them until you achieve a fine, flour-like consistency, which should take about 30 seconds. This oat flour will form the base of your muffins, lending them both structure and fiber, making them a healthier choice for breakfast or snacks.
Step 3: Combine the Muffin Base Ingredients
In the same blender, add the pumpkin puree, Greek yogurt, eggs, protein powder, pumpkin pie spice, cinnamon, baking powder, baking soda, and sea salt. Blend the mixture until everything is just combined, which should take around 20-30 seconds. Be careful not to overblend; you want your Pumpkin Protein Muffins to maintain a lovely texture.
Step 4: Add the Chocolate Chips
Once your batter is ready, gently stir in approximately 1/3 cup of dark chocolate chips with a spatula. Reserve some chips for sprinkling on top just before baking. This will not only enhance the sweetness but also create delightful pockets of melted chocolate in each muffin, making them even more irresistible!
Step 5: Fill the Muffin Liners
Now it’s time to pour the batter into your prepared muffin liners. Divide the batter evenly among the 12 cups, filling each about three-quarters full. The even distribution ensures that all your Pumpkin Protein Muffins will bake at the same rate and emerge fluffy and moist, a delightful treat for any time of the day.
Step 6: Bake the Muffins
Place your muffin pan in the preheated oven and bake for about 25-30 minutes. Keep an eye on them, and check for doneness by inserting a toothpick into the center of a muffin; it should come out clean or with a few moist crumbs for perfectly baked muffins. The tops will appear golden brown and slightly domed.
Step 7: Cool Before Serving
Once baked, remove the muffins from the oven and let them cool in the pan for about 10 minutes. This cooling period is essential, as it allows the Pumpkin Protein Muffins to firm up for easier handling. Afterward, transfer them to a wire rack to cool completely, or enjoy them warm with a dollop of Greek yogurt for an extra touch!

Pumpkin Protein Muffins: Variations & Substitutions
Feel free to make these delightful muffins your own by exploring exciting ingredient swaps and additions!
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Gluten-Free: Use certified gluten-free oats instead of traditional rolled oats to ensure these muffins are suitable for gluten-sensitive friends or family.
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Vegan Option: Substitute Greek yogurt with non-dairy yogurt and eggs with flax eggs to make these muffins completely vegan and still absolutely delicious!
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Lower Carb: Swap old-fashioned oats for almond flour. This will give you a lovely lower-carb version while still providing delightful texture.
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Protein Boost: Experiment with different flavors of protein powder, like chocolate or vanilla, to infuse your pumpkin muffins with unique tastes. A little variety can go a long way!
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Nutty Crunch: Incorporate chopped nuts or seeds, like walnuts or sunflower seeds, into the batter for a satisfying crunch that adds a layer of nutrition to your muffins.
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Pumpkin Spice Twist: If pumpkin pie spice isn’t on hand, mix your own with ground cinnamon, nutmeg, and ginger for that warm, cozy flavor that screams fall.
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Dried Fruit Addition: Swap out chocolate chips for dried cranberries or cherries; they create a tart and sweet contrast that pairs beautifully with the pumpkin flavor.
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Sweetness Control: Depending on the protein powder used, you might want to tweak the level of sweetness. Start with less sweetener, then adjust to your personal taste.
These delicious twists will help you create a personalized version of these muffins that you and your loved ones will adore. And remember, don’t hesitate to check out our recipes for Keto Cobb Egg and Chocolate Protein Pudding for more creative cooking inspiration!
Make Ahead Options
These Pumpkin Protein Muffins are perfect for busy home cooks looking to streamline their meal prep! You can prepare the muffin batter up to 24 hours in advance by blending all the ingredients together and storing it in an airtight container in the refrigerator. This not only saves time but also allows the flavors to meld beautifully overnight. If you prefer, you can bake the muffins and refrigerate them for up to 3 days or freeze them for even longer storage. To enjoy, simply reheat the muffins in the microwave for 30 seconds before serving. This way, you’ll have a warm, nutritious breakfast ready to go that’s just as delicious as when freshly baked!
How to Store and Freeze Pumpkin Protein Muffins
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Room Temperature: Allow your muffins to cool completely, then store them in an airtight container at room temperature for up to 3 days. This retains their moist texture and delightful flavor.
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Fridge: For longer freshness, keep the Pumpkin Protein Muffins in the refrigerator in an airtight container for up to a week. Reheat them briefly in the microwave for a warm treat!
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Freezer: Extended storage? Place the muffins in a freezer bag or airtight container, separating them with parchment paper, and freeze for up to 3 months. Thaw in the fridge or microwave before enjoying.
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Reheating: To enjoy your muffins warm, reheat them in the microwave for about 15-30 seconds or until heated through—perfect for a cozy morning boost!
What to Serve with Pumpkin Chocolate Chip Protein Muffins
Enhance your breakfast experience with delightful pairings that complement the warm, spiced flavors of these nutritious muffins.
- Greek Yogurt: A dollop adds creaminess and protein, elevating your muffin into a complete breakfast experience.
- Honey Drizzle: A light drizzle of honey amplifies the sweetness, creating a comforting contrast with the pumpkin and chocolate.
- Fresh Berries: Juicy berries bring a burst of freshness that balances the richness of the muffins, making each bite vibrant.
- Nut Butter Spread: Pair with almond or peanut butter for a satisfying crunch and healthy fats, perfect for fueling your day.
- Chai Tea: The warm, spiced notes of chai tea wonderfully complement the flavors of pumpkin, creating a cozy morning ritual.
For an extra treat, serve these muffins alongside some homemade applesauce or a scoop of low-sugar ice cream for a delightful afternoon snack. The contrast of textures will not only please your palate but also leave everyone craving another bite!
Expert Tips for Perfect Pumpkin Protein Muffins
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Pre-Blend Precision: Ensure your rolled oats are blended to a flour-like consistency for the best texture. If they’re too chunky, the muffins may not rise properly.
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Ingredient Temperature: Use room temperature ingredients, especially the Greek yogurt and eggs. This helps create a smooth batter, minimizing lumps for your pumpkin protein muffins.
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Don’t Overmix: Blend the batter just until combined to keep your muffins light and fluffy. Overmixing can lead to dense muffins that lose their appeal.
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Silicone Liners are Best: For easy removal, opt for silicone muffin liners; they prevent sticking and enhance the appearance of your muffins.
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Quality Check: Make sure your baking powder and baking soda are fresh for optimal rising. Expired leavening agents can result in flat muffins.
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Flavor Variations: Experiment with different extracts like almond or flavored protein powder to customize your pumpkin protein muffins for diverse palates!

Pumpkin Chocolate Chip Protein Muffins Recipe FAQs
What type of pumpkin puree works best for these muffins?
You can use either fresh or canned pumpkin puree for these muffins. Both options provide that delicious, earthy flavor and moisture. If you opt for fresh pumpkin, simply cook it and puree it until smooth before using. Canned pumpkin is a convenient alternative and is usually already smooth, making your preparation even easier.
How should I store the Pumpkin Protein Muffins to keep them fresh?
Once your muffins have cooled completely, store them in an airtight container at room temperature for up to 3 days. If you’d like them to last longer, place them in the refrigerator, where they can stay fresh for up to a week. Always remember to reheat them in the microwave for about 15-30 seconds for that just-baked warmth and texture!
Can I freeze Pumpkin Protein Muffins for later use?
Absolutely! To freeze your muffins, place them in a freezer bag or airtight container, spacing them with pieces of parchment paper to prevent sticking. They can remain in the freezer for up to 3 months. When you’re ready to enjoy one, simply thaw it overnight in the fridge or microwave it for about 30 seconds for a quick indulgence!
What should I do if my muffins turn out too dry?
If your muffins come out dry, it might be due to over-blending the batter or not measuring your ingredients accurately. I recommend ensuring the oats are blended just to a flour consistency and checking your oven’s temperature, as too high a temperature can dry out the muffins. Keep an eye on the baking time as well; they are ready when a toothpick comes out clean or with a few moist crumbs.
Are these muffins suitable for people with allergies?
These Pumpkin Protein Muffins can be adapted to fit various dietary needs. For a gluten-free version, ensure you use certified gluten-free oats. If you’re looking for a vegan option, replace the eggs with flax eggs—mix one tablespoon of ground flaxseed with three tablespoons of water and let it sit for 5 minutes to thicken. Always check labels on the protein powder and any added ingredients to ensure they meet your dietary restrictions.

Moist Pumpkin Protein Muffins You’ll Crave Every Morning
Ingredients
Equipment
Method
- Preheat Your Oven: Start by preheating your oven to 350°F (175°C). Prepare your muffin pan by greasing or placing silicone liners.
- Blend the Oats: Place the rolled oats into a blender and blend until a fine, flour-like consistency is reached, about 30 seconds.
- Combine the Muffin Base Ingredients: In the blender, add pumpkin puree, Greek yogurt, eggs, protein powder, pumpkin pie spice, cinnamon, baking powder, baking soda, and sea salt. Blend until just combined.
- Add the Chocolate Chips: Gently stir in dark chocolate chips, reserving some for sprinkling on top.
- Fill the Muffin Liners: Pour the batter into prepared muffin liners, filling each about three-quarters full.
- Bake the Muffins: Place in the oven and bake for about 25-30 minutes, checking for doneness with a toothpick.
- Cool Before Serving: After baking, let the muffins cool in the pan for 10 minutes before transferring to a wire rack.







