As I stood in my kitchen, the crisp autumn air creeping in through the window, I couldn’t resist the urge to whip up a batch of my favorite Swirled Pumpkin Cream Cheese Muffins. The enticing scent of pumpkin spice blended with sweet cream cheese instantly transported me to memories of cozy family gatherings and festive celebrations. These muffins aren’t just another baked good; they’re a warm embrace on chilly mornings, ready in just 30 minutes for those busy weekdays or lazy weekends. The perfect combination of moist pumpkin cake and a creamy swirl makes them a delectable treat that’s sure to please everyone. Ready to bring home that comforting autumn vibe? Let’s bake some muffins that will make your kitchen feel like a fall wonderland!

Why are Pumpkin Cream Cheese Muffins so special?
Moist and Flavorful: These muffins blend the rich taste of pumpkin with a creamy, sweet cream cheese swirl, creating an unforgettable flavor combination.
Quick Preparation: Ready in just 30 minutes, these delectable treats fit perfectly into your busy schedule, making them ideal for breakfast or a cozy snack.
Fall Vibes: The warm aroma of pumpkin spice wafting through your kitchen will instantly transport you to a charming autumn day, reminiscent of festive gatherings.
Crowd-Pleasing Goodness: Whether serving at family brunch or as a delightful gift, these muffins are guaranteed to impress everyone and disappear quickly!
Versatile Options: Feel free to mix in nuts or chocolate chips, or switch to gluten-free flour for varied textures. For more cozy baking inspiration, check out my recipe for Bake Banana Cream or Garlic Parmesan Cheeseburger.
Pumpkin Cream Cheese Muffin Ingredients
• Get ready to experience the joy of baking with these delicious Pumpkin Cream Cheese Muffins using this ingredient list!
For the Muffins
- All-Purpose Flour – Provides structure and body; opt for gluten-free all-purpose flour for gluten-sensitive friends.
- Pumpkin Spice – Adds that warm, signature autumn flavor; if you don’t have it handy, use a mix of cinnamon, ginger, nutmeg, cloves, and allspice.
- Baking Soda – Acts as a leavening agent for fluffy muffins; ensure it’s fresh for optimal results.
- Salt – Enhances sweetness and balances flavors; it’s essential for depth.
- Pumpkin Puree (canned) – The moisture and flavor base in your muffins; fresh puree works too if it has similar consistency.
- Granulated Sugar – The primary sweetener; adjust to your taste for the perfect sweetness.
- Brown Sugar – Brings depth and moisture; you can use light or dark brown sugar interchangeably.
- Large Eggs – Binds the ingredients and enriches the muffins; for an egg-free version, try aquafaba instead.
- Vegetable Oil or Butter – Adds moisture; butter gives a richer flavor—make sure it’s melted and cooled before using!
- Vanilla Extract – Enhances the overall flavor profile; use in both muffin batter and cream cheese swirl.
For the Cream Cheese Swirl
- Cream Cheese – Creates the delightful swirl on top; keep it at room temperature for easier mixing.
- Granulated Sugar (for cream cheese mixture) – Sweetens up the cream cheese swirl; feel free to adjust based on your taste preference.
- Egg Yolk – Adds richness for the cream cheese filling; can be omitted for an egg-free adaptation.
- Vanilla Extract (for cream cheese) – Deepens the flavor of the swirl, making it extra luscious.
Get ready to create these delightful Pumpkin Cream Cheese Muffins that everyone will rave about!
Step‑by‑Step Instructions for Pumpkin Cream Cheese Muffins
Step 1: Preheat and Prepare
Begin by preheating your oven to 375°F (190°C). While it’s heating, line your muffin tin with paper liners or lightly grease each cup with cooking spray. This step ensures that your delicious pumpkin cream cheese muffins release easily after baking, leaving you with perfectly intact treats ready to enjoy.
Step 2: Mix the Wet Ingredients
In a large mixing bowl, whisk together 1 cup of pumpkin puree, ½ cup of granulated sugar, ½ cup of brown sugar, 2 large eggs, ⅓ cup of vegetable oil (or melted butter), and 1 teaspoon of vanilla extract. Mix until the ingredients are smooth and well combined, creating a rich, orange batter that evokes the warmth of autumn.
Step 3: Combine the Dry Ingredients
In a separate bowl, combine 1 ½ cups of all-purpose flour, 2 teaspoons of pumpkin spice, 1 teaspoon of baking soda, and ½ teaspoon of salt. Stir the dry ingredients thoroughly to ensure even distribution, as this will help your pumpkin cream cheese muffins rise beautifully and achieve that lovely fluffy texture.
Step 4: Mix Wet and Dry Ingredients
Gradually add the dry mixture to the wet ingredients, gently stirring with a spatula until just combined. Avoid over-mixing; the batter should remain slightly lumpy for optimal fluffiness in your muffins. Set this delightful pumpkin batter aside, ensuring all the flavors are captured in each bite.
Step 5: Fill the Muffin Tins
Spoon the pumpkin batter into the prepared muffin tins, filling each cup about ¾ full. This allows room for the muffins to rise without overflowing. As you fill the cups, enjoy the tempting aroma of pumpkin spice that fills your kitchen, hinting at the wonderful treats to come.
Step 6: Prepare the Cream Cheese Mixture
In a medium bowl, blend 8 oz of softened cream cheese, ⅓ cup of granulated sugar, 1 egg yolk, and 1 teaspoon of vanilla extract until smooth. This creamy mixture will create a delightful swirl atop your muffins. If it’s lump-free and well blended, it’s ready to take your pumpkin cream cheese muffins to the next level.
Step 7: Create the Swirl
Dollop spoonfuls of the cream cheese mixture onto the center of each muffin. Using a toothpick or a skewer, gently swirl the cream cheese into the pumpkin batter, creating a beautiful marbled effect while being careful not to over-mix. This step adds a luscious layer of creaminess that will charm your taste buds.
Step 8: Bake to Perfection
Place the muffin tin in the preheated oven and bake for 18–20 minutes. Your pumpkin cream cheese muffins are done when the tops are golden brown, and a toothpick inserted into the pumpkin part comes out clean or with a few moist crumbs. Keep an eye on them to ensure perfect doneness!
Step 9: Cool and Serve
Once baked, remove the muffins from the oven and let them cool in the tin for 10 minutes. This brief cooling period will make them easier to remove without crumbling. After cooling, transfer your pumpkin cream cheese muffins to a wire rack to cool completely, if you can resist indulging right away!

Make Ahead Options
These Pumpkin Cream Cheese Muffins are a fantastic option for meal prepping! You can prepare the muffin batter up to 24 hours in advance and store it in an airtight container in the refrigerator. Additionally, you can mix the cream cheese swirl and refrigerate it separately for the same timeframe. When you’re ready to bake, simply fill the muffin tins with the chilled batter, dollop the cream cheese mixture on top, and swirl as directed. Make sure to bring the chilled batter to room temperature before baking to ensure even cooking, and your muffins will turn out just as delicious as if they were freshly made!
Expert Tips for Pumpkin Cream Cheese Muffins
-
Avoid Over-Mixing: Gently stir the batter until just incorporated. Over-mixing can lead to dense muffins instead of fluffy pumpkin cream cheese muffins.
-
Perfect Swirl Technique: Dollop the cream cheese mixture gently and swirl with a toothpick. Don’t over-swir, you want a marbled look, not completely combined.
-
Check for Doneness: Insert a toothpick into the pumpkin part of a muffin. It should come out clean or with a few moist crumbs, ensuring deliciously baked treats.
-
Use Fresh Ingredients: Make sure your baking soda is fresh for maximum rise. Stale ingredients can affect the texture and fluffiness of your muffins.
-
Room Temperature Cream Cheese: Soften your cream cheese before mixing for a smoother blend in the cream cheese swirl. It makes all the difference!
-
Customize Your Muffins: Feel free to add nuts or chocolate chips for added texture. Get creative and make these pumpkin cream cheese muffins your own!
Pumpkin Cream Cheese Muffins Variations
Feel free to get creative and customize your pumpkin cream cheese muffins to match your tastes and dietary preferences!
- Gluten-Free: Substitute all-purpose flour with a gluten-free blend to ensure everyone can enjoy the muffins.
- Nutty Delight: Add ½ cup of chopped pecans or walnuts for a warm and crunchy texture that complements the pumpkin beautifully.
- Chocolate Lovers: Mix in ½ cup of chocolate chips for a sweet surprise that takes these muffins to the next level!
- Spicy Kick: Incorporate a dash of cayenne pepper or crushed red pepper flakes into the batter for a subtle heat that surprises the palate.
- Extra Moisture: Swap out half of the vegetable oil for unsweetened applesauce to create an extra moist muffin that’s bursting with natural sweetness.
- Refreshing Citrus: Add 1 tablespoon of orange zest to the muffin batter for a bright and refreshing contrast to the pumpkin flavors.
- Creamy Twist: Blend in a tablespoon of Greek yogurt into the cream cheese mixture for an ultra-creamy swirl that’s downright dreamy.
- Dairy-Free: Use coconut cream in place of cream cheese for a delicious dairy-free option that adds a delightful coconut flavor to the muffins.
Explore the variations for a scrumptious twist on your favorite fall treat while treating your taste buds to new culinary adventures! And if you’re in the mood for more delicious recipes, check out my Mushroom Chicken or Stuffed Chicken Cheese for more comforting flavors.
What to Serve with Swirled Pumpkin Cream Cheese Muffins
Cozy up your autumn mornings with delightful accompaniments that highlight the warm, spiced flavors of your muffins.
-
Creamy Maple Butter: Spread this sweet and rich butter on your muffins for a taste of fall that melts perfectly into the warm pumpkin treat.
-
Spiced Chai Latte: The warm spices in chai complement the pumpkin flavor wonderfully, creating a cozy drink pairing to sip alongside your muffins.
-
Fresh Fruit Salad: A mix of crisp apples and juicy pears adds a refreshing crunch, balancing the moistness of the muffins and enhancing the wholesome feel of breakfast.
-
Whipped Cream: Add a dollop of this fluffy delight on top of the muffins for extra sweetness and a luxurious feel to each bite.
-
Cinnamon Sugar Dusting: Sprinkle a little cinnamon sugar on top before serving for an added touch of sweetness and spice that pairs beautifully with the muffins’ flavor.
-
Chai-Spiced Overnight Oats: For a wholesome breakfast spread, serve these as a nutritious side. The flavors echo the muffin, creating a delightful harmony on your breakfast table.
-
Apple Cider: The seasonal favorite drink offers a subtle tartness that enhances the sweet and spicy notes of the pumpkin muffins perfectly.
Indulge in these delicious pairings to create a perfect autumn breakfast experience everyone will love!
How to Store and Freeze Pumpkin Cream Cheese Muffins
Fridge: Store the muffins in an airtight container for up to 5 days. This helps preserve their moisture and flavor, making them a perfect grab-and-go breakfast.
Freezer: For longer storage, freeze the muffins individually wrapped in plastic wrap for up to 3 months. When you’re ready to enjoy them, simply thaw in the fridge or at room temperature.
Reheating: To reheat, pop them in the microwave for about 15-20 seconds or warm them in the oven at 350°F (175°C) for 5-7 minutes. This will revive their fresh-baked taste, especially the beloved cream cheese swirl.

Pumpkin Cream Cheese Muffins Recipe FAQs
What type of pumpkin puree should I use?
Absolutely! Canned pumpkin puree is convenient and works great in this recipe. However, for a fresh twist, you can use homemade pumpkin puree as long as it has a similar consistency. Just remember to strain any excess moisture if using fresh puree!
How do I store leftover muffins?
Very simply! Store your pumpkin cream cheese muffins in an airtight container at room temperature for up to 3 days, or move them to the fridge for up to 5 days for optimal freshness. Let them cool completely first to avoid sogginess.
Can I freeze pumpkin cream cheese muffins?
Definitely! To freeze the muffins, wrap each one tightly in plastic wrap and place them in a freezer-safe bag. They will keep well for up to 3 months. When you’re ready to enjoy them, just thaw them out in the fridge overnight or at room temperature for a couple of hours.
What should I do if my muffins are too dense?
If your muffins turn out dense, it might be due to over-mixing the batter. Remember to combine the wet and dry ingredients gently until just incorporated to preserve the fluffiness. Additionally, check that your baking soda is fresh to ensure proper leavening. If all else fails, try sifting your dry ingredients together before mixing to create a lighter texture.
Are these muffins suitable for people with dietary restrictions?
Definitely! For a gluten-free option, substitute all-purpose flour with a gluten-free all-purpose blend. If you’re looking for an egg-free version, replace the eggs with aquafaba using three tablespoons per egg. Just keep an eye on the texture to make sure it stays fluffy and delicious!
How long can I keep these muffins in the fridge?
You can store your pumpkin cream cheese muffins in the fridge for up to 5 days. When you’re ready to serve, let them come to room temperature for the best flavor and texture experience. They’re amazing warm, especially with a side of coffee!

Delicious Pumpkin Cream Cheese Muffins Everyone Will Love
Ingredients
Equipment
Method
- Preheat your oven to 375°F (190°C) and line your muffin tin with paper liners or grease with cooking spray.
- In a large mixing bowl, whisk together pumpkin puree, granulated sugar, brown sugar, eggs, vegetable oil, and vanilla extract until smooth.
- In a separate bowl, combine flour, pumpkin spice, baking soda, and salt, stirring thoroughly.
- Gradually add the dry mixture to the wet ingredients, gently stirring until just combined.
- Spoon the pumpkin batter into prepared muffin tins, filling each cup about ¾ full.
- In a medium bowl, blend cream cheese, granulated sugar, egg yolk, and vanilla extract until smooth.
- Dollop spoonfuls of the cream cheese mixture onto the center of each muffin and swirl gently with a toothpick.
- Bake in the preheated oven for 18-20 minutes or until golden brown.
- Let the muffins cool in the tin for 10 minutes before transferring them to a wire rack.







